Journal: iScience
Article Title: Serglycin modulates inflammation and metabolism in macrophages
doi: 10.1016/j.isci.2026.115235
Figure Lengend Snippet: SRGN deficiency disrupts macrophage inflammatory activation and alters mitochondrial function (A) Experimental design. Wild-type ( SRGN +/+ ) and knockout ( SRGN −/− ) THP-1 cells were differentiated into macrophages (M0) and polarized to M1 with LPS and IFN-γ for 24 h, followed by RNA-seq and proteomic analysis of culture supernatants ( n = 4). (B) Relative SRGN expression in wild-type THP-1 cells, showing significant induction after M1 polarization (mean ± SEM; unpaired Student’s t test; ∗∗ p < 0.0001). (C) Gene set enrichment analysis (GSEA) of the macrophage activation signature comparing SRGN −/− and SRGN +/+ THP-1 cells. Knockout cells displayed a reduced extent of activation compared to wild-type cells. (D) Differential expression analysis (volcano plot) of SRGN −/− versus SRGN +/+ THP-1 M1 cells. A total of 2,554 genes were significantly altered (adjusted p < 0.05, fold-change threshold of 1.2), with 1,112 upregulated and 1,442 downregulated in knockout cells. (E and F) Hallmark pathway enrichment analysis of significantly differentially expressed genes. Upregulated pathways in SRGN −/− THP-1 cells included inflammatory response, interferon-γ response, interferon-α response, IL2/STAT5 signaling, and epithelial-mesenchymal transition (E). Downregulated pathways included mTORC1 signaling, glycolysis, cholesterol homeostasis, bile acid metabolism, and reactive oxygen species (ROS) pathways (F). Significant pathways are marked with an asterisk (∗). (G) Overlap of differentially expressed genes between SRGN −/− THP-1 cells and Srgn −/− murine macrophages. A total of 115 commonly upregulated and 189 commonly downregulated genes were identified. (H–I) Pathway enrichment analysis of commonly altered genes. Upregulated genes were enriched for inflammatory response and interferon pathways (H), whereas downregulated genes were enriched for TNF-α/NF-κB signaling and glycolysis (I). (J) Overlap of TNF-α signaling genes between human and mouse macrophages, revealing 15 commonly upregulated and 9 commonly downregulated genes. Notably, commonly downregulated genes included ZFP36 , KLF2 , HES1 , and BHLHE40 , regulators of cytokine production and inflammatory programs.
Article Snippet: THP-1 human monocytic cell line , ATCC , RRID: CVCL_0006.
Techniques: Activation Assay, Knock-Out, RNA Sequencing, Expressing, Quantitative Proteomics